You see a filtered list - Author: Clavel

2026
[34]	Alcohol consumption in metabolic dysfunction-associated steatotic liver disease (MASLD): understanding the gut–liver crosstalk for clinical translation (Benedé-Ubieto, Raquel, Estévez-Vázquez, Olga, Acar, Rana, Leal-Lassalle, Hector, Gutierrez, Alejandro H., Redondo-Urzainqui, Ana, Iborra, Salvador, Odintsova, Vera E., Tyakht, Alexander, Herranz, José María, Firat, Zehra, Basol, Merve, Korkmaz, Busra, Sanz-García, Carlos, Juanola, Oriol, Caparrós, Esther, Francés, Rubén, Ciudin, Andreea, Pericàs, Juan M., Gómez-Santos, Beatriz, Aspichueta, Patricia, Treichel, Nicole, Clavel, Thomas, Reißing, Johanna, Bruns, Tony, Bartneck, Matthias, Mazariegos, Marina S., Wolters, Justina Clarinda, Jorquera, Gonzalo, Liedtke, Christian, Vaquero, Javier, Bañares, Rafael, Cakan-Akdogan, Gulcin, Ávila, Matías A., Konu, Ozlen, Cubero, Francisco Javier and Nevzorova, Yulia A.), In Gut microbes, Landes Bioscience, volume 18, 2026, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[33]	A mixture of plant polyphenols unexpectedly aggravates liver metastasis of colorectal cancer in mice (Erdem, Merve, Roth, Johanna, Knobloch, Jana, Nolting, Jochen, Hatten, Hannes, Sahin, Eray, Schön, Felix, Halbfeld, Sandra, Treichel, Nicole, Clavel, Thomas, Bülow, Roman David, Liedtke, Christian and Cramer, Thorsten), In , Cold Spring Harbor Laboratory, NY, 2026, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[32]	Novel myo -inositol to butyrate fermentation pathway in the prevalent human gut species Dysosmobacter welbionis, a bacterium associated with improved metabolic and liver health (Lee, Chi-Hsien, Bui, Thi Phuong Nam, Petitfils, Camille, Jian, Ching, Wong, Giselle C., Puel, Anthony, Le Roy, Tiphaine, Bellais, Samuel, Ben Abdallah, Bouthaina, Nehlich, Mélanie, Leicht, Thomas, Jia, Manyi, Hoyles, Lesley, Federici, Massimo, Fernández-Real, Jose Manuel, Burcelin, Remy, Dumas, Marc-Emmanuel, Delzenne, Nathalie M., Clavel, Thomas, Boeren, Sjef, Troise, Antonio Dario, Scaloni, Andrea, Muccioli, Giulio G., De Vos, Willem M., Van Hul, Matthias and Cani, Patrice D.), In Gut, BMJ Publishing Group, 2026, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[31]	Effector–host interactome map links type III secretion systems in healthy gut microbiomes to immune modulation (Young, Veronika, Dohai, Bushra, Halder, Hridi, Fernandez-Macgregor, Jaime, van Heusden, Niels S., Hitch, Thomas C. A., Weller, Benjamin, Hyden, Patrick, Saha, Deeya, Pieren, Daan K. J., Rittchen, Sonja, Lambourne, Luke, Maseko, Sibusiso B., Lin, Chung-Wen, Tun, Ye Min, Bibus, Jonas, Pletschacher, Luisa, Boujeant, Mégane, Choteau, Sébastien A., Bergogne, Lou, Perrin, Jérémie, Ober, Franziska, Schwehn, Patrick, Rothballer, Simin T., Altmann, Melina, Altmann, Stefan, Strobel, Alexandra, Rothballer, Michael, Tofaute, Marie, Kotlarz, Daniel, Heinig, Matthias, Clavel, Thomas, Calderwood, Michael A., Vidal, Marc, Twizere, Jean-Claude, Vincentelli, Renaud, Krappmann, Daniel, Boes, Marianne, Falter, Claudia, Rattei, Thomas, Brun, Christine, Zanzoni, Andreas and Falter-Braun, Pascal), In Nature microbiology, Nature Publishing Group, volume 11, 2026, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2025
[30]	Intercellular adhesion molecule-1 protects against adipose tissue inflammation and insulin resistance but promotes liver disease activity in western-diet fed mice (Eswaran, Sreepradha, Gebert, Laura, Schraven, Sarah, Treichel, Nicole, Ritz, Thomas, Hamm, Sabine, Seeger, Agnes, Kießling, Fabian, Clavel, Thomas, Dreschers, Stephan, Wagner, Norbert and Schippers, Angela), In Scientific reports, Springer Nature, volume 15, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[29]	Progressive changes in phenotype, transcriptome and proliferation capacity characterise continued maturation and migration of intestinal cDCs in homeostasis (Hager, Fabian Tobias, Nguyen, Trong-Hieu, Laouina, Asmae, Kopplin, Lydia, Andrusaite, Anna, Jennings, Susan A. V., Simons, Britta, Leufgen, Andrea, Clavel, Thomas, Milling, Simon, Prinz, Immo, Förster, Reinhold, Stiehl, Thomas Peter, Pabst, Oliver and Cerovic, Vuk), In Nature Communications, Springer Nature, volume 16, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[28]	HiBC: a publicly available collection of bacterial strains isolated from the human gut (Hitch, Thomas C. A., Masson, Johannes M., Pauvert, Charlie, Bosch, Johanna, Nüchtern, Selina, Treichel, Nicole, Baloh, Marko, Razavi, Soheila, Afrizal, Afrizal, Kousetzi, Ntana, Aguirre, Andrea M., Wylensek, David, Coates, Amy, Jennings, Susan A. V., Panyot, Atscharah, Viehof, Alina, Schmitz, Matthias, Stuhrmann, Maximilian, Deis, Evelyn C., Bisdorf, Kevin, Chiotelli, Maria D., Lissin, Artur, Schober, Isabel, Witte, Julius, Cramer, Thorsten, Riedel, Thomas, Wende, Marie, Winter, Katrin A., Amend, Lena, Riva, Alessandra, Trinh, Stefanie Nhu-Binh, Mitchell, Laura, Hartman, Jonathan Aron, Berry, David, Seitz, Jochen, Bossert, Lukas C., Grognot, Marianne, Allers, Thorsten, Strowig, Till, Pester, Michael, Abt, Birte, Reimer, Lorenz C., Overmann, Jörg and Clavel, Thomas), In Nature Communications, Springer Nature, volume 16, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[27]	Salmonella infection accelerates postnatal maturation of the intestinal epithelium (Schlößer, Stefan, Ullrich, Anna-Lena, Modares, Nastaran Fazel, Schmitz, Matthias, Schöneich, Johannes, Zhang, Kaiyi, Richter, Isabel, Robrahn, Laura Marie, Schraven, Sarah, Nagai, James S., Haange, Sven-Bastiaan, Jennings, Susan A. V., Clavel, Thomas, Rolle-Kampczyk, Ulrike, Kießling, Fabian, Costa, Ivan G., Muncan, Vanesa, Repnik, Urska, von Bergen, Martin, Dupont, Aline and Hornef, Mathias W.), In Proceedings of the National Academy of Sciences of the United States of America, National Acad. of Sciences, volume 122, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[26]	Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut (Schmitz, Matthias, Dimonaco, Nicholas J., Clavel, Thomas and Hitch, Thomas C. A.), In Nature Communications, Springer Nature, volume 16, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[25]	Clonal persistence dominates homeostatic intestinal IgA responses (Simons, Britta, Nguyen, Hieu Trong, Panyot, Atscharah, Hager, Fabian Tobias, Kabbert, Johanna, Laouina, Asmae, Schreiber, Jonathan, Kopplin, Lydia, Rollenske, Tim, Clavel, Thomas and Pabst, Oliver), In Immunity, Cell Press, volume 58, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[24]	Faecal Cytolysin is Associated With Worse Survival in Patients With Primary Sclerosing Cholangitis (Özdirik, Burcin, Berger, Hilmar, Tonetti, Fernanda Raya, Cabré, Noemí, Treichel, Nicole, Clavel, Thomas, Tacke, Frank, Sigal, Michael and Schnabl, Bernd), In Liver international, Wiley-Blackwell, volume 45, 2025, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2024
[23]	Broad diversity of human gut bacteria accessible via a traceable strain deposition system (Hitch, Thomas C. A., Masson, Johannes M., Pauvert, Charlie, Bosch, Johanna, Nüchtern, Selina, Treichel, Nicole, Baloh, Marko, Razavi, Soheila, Afrizal, Afrizal, Kousetzi, Ntana, Aguirre, Andrea M., Wylensek, David, Coates, Amy, Jennings, Susan A. V., Panyot, Atscharah, Viehof, Alina, Schmitz, Matthias, Stuhrmann, Maximilian, Deis, Evelyn C., Bisdorf, Kevin, Chiotelli, Maria D., Lissin, Artur, Schober, Isabel, Witte, Julius, Cramer, Thorsten, Riedel, Thomas, Wende, Marie, Winter, Katrin A., Amend, Lena, Riva, Alessandra, Trinh, Stefanie Nhu-Binh, Mitchell, Laura, Hartman, Jonathan, Berry, David, Seitz, Jochen, Bossert, Lukas C., Grognot, Marianne, Allers, Thorsten, Strowig, Till, Pester, Michael, Abt, Birte, Reimer, Lorenz C., Overmann, Jörg and Clavel, Thomas), In , Cold Spring Harbor Laboratory, NY, 2024, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[22]	Harmonious naming across nomenclature codes exemplified by the description of bacterial isolates from the mammalian gut (Hitch, Thomas C. A., Wylensek, David, Bisdorf, Kevin, Buhl, Eva Miriam, Treichel, Nicole, Abt, Birte, Overmann, Jörg and Clavel, Thomas), In Systematic and applied microbiology, Elsevier, volume 47, 2024, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[21]	Synthetic Communities of Gut Microbes for Basic Research and Translational Approaches in Animal Health and Nutrition (Jennings, Susan A. V. and Clavel, Thomas), In Annual review of animal biosciences, volume 12, 2024, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[20]	Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut (Schmitz, Matthias, Dimonaco, Nicholas J., Clavel, Thomas and Hitch, Thomas C. A.), In , 2024, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2023
[19]	A MALDI-TOF MS library for rapid identification of human commensal gut bacteria from the class Clostridia (Asare, Paul Tetteh, Lee, Chi-Hsien, Hürlimann, Vera, Teo, Youzheng, Cuénod, Aline, Akduman, Nermin, Gekeler, Cordula, Afrizal, Afrizal, Corthesy, Myriam, Kohout, Claire, Thomas, Vincent, de Wouters, Tomas, Greub, Gilbert, Clavel, Thomas, Pamer, Eric G., Egli, Adrian, Maier, Lisa and Vonaesch, Pascale), In Frontiers in microbiology, Frontiers Media, volume 14, 2023, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[18]	A physiologically based model of bile acid metabolism in mice (Kister, Bastian, Viehof, Alina, Rolle-Kampczyk, Ulrike, Schwentker, Annika, Treichel, Nicole, Jennings, Susan A. V., Wirtz, Theresa, Blank, Lars Mathias, Hornef, Mathias W., von Bergen, Martin, Clavel, Thomas and Küpfer, Lars), In iScience, Elsevier, volume 26, 2023, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[17]	Gut–liver axis: barriers and functional circuits (Pabst, Oliver, Hornef, Mathias W., Schaap, Frank G., Cerovic, Vuk, Clavel, Thomas and Bruns, Tony), In Nature reviews / Gastroenterology & hepatology, Nature Publishing Group, volume 20, 2023, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[16]	M cell maturation and cDC activation determine the onset of adaptive immune priming in the neonatal Peyer’s patch (Torow, Natalia, Li, Ronghui, Hitch, Thomas C. A., Mingels, Clemens, Al Bounny, Shahed, van Best, Niels, Stange, Eva-Lena, Simons, Britta, Maié, Tiago, Rüttger, Lennart, Gubbi, Narasimha Murthy Keshava Prasad, Abbott, Darryl Adelaide, Benabid, Adam, Gadermayr, Michael, Runge, Solveig, Treichel, Nicole, Merhof, Dorit, Rosshart, Stephan Patrick, Jehmlich, Nico, Hand, Timothy Wesley, von Bergen, Martin, Heymann, Felix, Pabst, Oliver, Clavel, Thomas, Tacke, Frank, Lelouard, Hugues, Costa, Ivan G. and Hornef, Mathias W.), In Immunity, Elsevier, volume 56, 2023, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2022
[15]	Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities (Afrizal, Afrizal, Jennings, Susan A. V., Hitch, Thomas C. A., Riedel, Thomas, Basic, Marijana, Panyot, Atscharah, Treichel, Nicole, Hager, Fabian Tobias, Wong, Erin Oi-Yan, Wolter, Birger, Viehof, Alina, von Strempel, Alexandra, Eberl, Claudia, Buhl, Eva Miriam, Abt, Birte, Bleich, André, Tolba, René H., Blank, Lars Mathias, Navarre, William W., Kießling, Fabian, Horz, Hans-Peter, Torow, Natalia, Cerovic, Vuk, Stecher, Bärbel, Strowig, Till, Overmann, Jörg and Clavel, Thomas), In Cell host and microbe, Elsevier, volume 30, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[14]	Species-targeted sorting and cultivation of commensal bacteria from the gut microbiome using flow cytometry under anaerobic conditions (Bellais, Samuel, Nehlich, Mélanie, Ania, Maryne, Duquenoy, Aurore, Mazier, Wilfrid, van den Engh, Ger, Baijer, Jan, Treichel, Nicole, Clavel, Thomas, Belotserkovsky, Ilia and Thomas, Vincent), In Microbiome, Biomed Central, volume 10, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[13]	Next steps after 15 stimulating years of human gut microbiome research (Clavel, Thomas, Horz, Hans-Peter, Segata, Nicola and Vehreschild, Maria J. G. T.), In Microbial biotechnology, Wiley-Blackwell, volume 15, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[12]	Ring Trial on Quantitative Assessment of Bile Acids Reveals a Method- and Analyte-Specific Accuracy and Reproducibility (Haange, Sven-Bastiaan, Till, Andreas, Bergh, Per-Olof, Fauler, Günter, Gigl, Michael, Löfgren-Sandblom, Anita, Schaap, Frank G., Clavel, Thomas, Trautwein, Christian, Fenske, Wiebke, Kleigrewe, Karin, Marschall, Hanns-Ulrich, Olde Damink, Steven W. M., Moustafa, Tarek, von Bergen, Martin and Rolle-Kampczyk, Ulrike), In Metabolites, MDPI, volume 12, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[11]	Microbiome-based interventions to modulate gut ecology and the immune system (Hitch, Thomas C. A., Hall, Lindsay J., Walsh, Sarah Kate, Leventhal, Gabriel E., Slack, Emma, de Wouters, Tomas, Walter, Jens and Clavel, Thomas), In Mucosal immunology, Nature Publishing Group, volume 15, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[10]	Eggerthella lenta DSM 2243 Alleviates Bile Acid Stress Response in Clostridium ramosum and Anaerostipes caccae by Transformation of Bile Acids (Pedersen, Kristian Jensen, Haange, Sven-Bastiaan, Žížalová, Kateřina, Viehof, Alina, Clavel, Thomas, Leniček, Martin, Engelmann, Beatrice, Wick, Lukas Y., Schaap, Frank G., Jehmlich, Nico, Rolle-Kampczyk, Ulrike and von Bergen, Martin), In Microorganisms, MDPI, volume 10, 2022, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2021
[9]	Upregulation of anti-oxidative stress response improves metabolic changes in l-selectin-deficient mice but does not prevent NAFLD progression or fecal microbiota shifts (Eswaran, Sreepradha, Babbar, Anshu, Drescher, Hannah K., Hitch, Thomas C. A., Clavel, Thomas, Muschaweck, Moritz, Ritz, Thomas, Kroy, Daniela C., Trautwein, Christian, Wagner, Norbert and Schippers, Angela), In International journal of molecular sciences, Molecular Diversity Preservation International, volume 22, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[8]	Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria (Hitch, Thomas C. A., Riedel, Thomas, Oren, Aharon, Overmann, Jörg, Lawley, Trevor D. and Clavel, Thomas), In ISME communications, Springer Nature, volume 1, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[7]	MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes (Kumar, Neeraj, Hitch, Thomas C. A., Haller, Dirk, Lagkouvardos, Ilias and Clavel, Thomas), In Microbial biotechnology, Wiley-Blackwell, volume 14, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[6]	A diet-specific microbiota drives Salmonella Typhimurium to adapt its in vivo response to plant-derived substrates (Prax, Nicoletta, Wagner, Stefanie, Schardt, Jakob, Neuhaus, Klaus, Clavel, Thomas and Fuchs, Thilo M.), In Animal microbiome, BioMed Central, volume 3, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[5]	Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling (Reitmeier, Sandra, Hitch, Thomas C. A., Treichel, Nicole, Fikas, Nikolaos, Hausmann, Bela, Ramer-Tait, Amanda E., Neuhaus, Klaus, Berry, David, Haller, Dirk, Lagkouvardos, Ilias and Clavel, Thomas), In ISME communications, Springer Nature, volume 1, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[4]	The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice (Streidl, Theresa, Karkossa, Isabel, Segura Muñoz, Rafael R., Eberl, Claudia, Zaufel, Alex, Plagge, Johannes, Schmaltz, Robert, Schubert, Kristin, Basic, Marijana, Schneider, Kai Markus, Afify, Mamdouh, Trautwein, Christian, Tolba, René H., Stecher, Bärbel, Doden, Heidi L., Ridlon, Jason M., Ecker, Josef, Moustafa, Tarek, von Bergen, Martin, Ramer-Tait, Amanda E. and Clavel, Thomas), In Gut microbes, Landes Bioscience, volume 13, 2021, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2020
[3]	High microbiota reactivity of adult human intestinal IgA requires somatic mutations (Kabbert, Johanna, Benckert, Julia, Rollenske, Tim, Hitch, Thomas C. A., Clavel, Thomas, Cerovic, Vuk, Wardemann, Hedda and Pabst, Oliver), In Journal of experimental medicine, Rockefeller Univ. Press, volume 217, 2020, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
[2]	An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome (Lesker, Till R., Durairaj, Abilash C., Gálvez, Eric J. C., Lagkouvardos, Ilias, Baines, John F., Clavel, Thomas, Sczyrba, Alexander, McHardy, Alice C. and Strowig, Till), In Cell reports, Elsevier, volume 30, 2020, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]
2019
[1]	The Compromised Mucosal Immune System of β7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis (Babbar, Anshu, Hitch, Thomas C. A., Pabst, Oliver, Clavel, Thomas, Hübel, Jessica, Eswaran, Sreepradha, Wagner, Norbert and Schippers, Angela), In Frontiers in microbiology, Frontiers Media, volume 10, 2019, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). [bibtex] [url] [doi]