| [10] | The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota (Lagkouvardos, Ilias, Pukall, Rüdiger, Abt, Birte, Foesel, Bärbel U., Meier-Kolthoff, Jan P., Kumar, Neeraj, Bresciani, Anne, Martínez, Inés, Just, Sarah, Ziegler, Caroline, Brugiroux, Sandrine, Garzetti, Debora, Wenning, Mareike, Bui, Thi P. N., Wang, Jun, Hugenholtz, Floor, Plugge, Caroline M., Peterson, Daniel A., Hornef, Mathias W., Baines, John F., Smidt, Hauke, Walter, Jens, Kristiansen, Karsten, Nielsen, Henrik B., Haller, Dirk, Overmann, Jörg, Stecher, Bärbel and Clavel, Thomas), In Nat. Microbiol., volume 1, 2016. |
| [9] | Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria (Afrizal, Afrizal, Hitch, Thomas C. A., Viehof, Alina, Treichel, Nicole, Riedel, Thomas, Abt, Birte, Buhl, Eva M., Kohlheyer, Dietrich, Overmann, Jörg and Clavel, Thomas), In Method. Enzymol., volume 24. |
| [8] | Enhanced cultured diversity of the mouse gut microbiota enables custom-made synthetic communities (Afrizal, Afrizal, Jennings, Susan A. V., Hitch, Thomas C. A., Riedel, Thomas, Basic, Marijana, Panyot, Atscharah, Treichel, Nicole, Hager, Fabian T., Wong, Erin Oi-Yan, Wolter, Birger, Viehof, Alina, von Strempel, Alexandra, Eberl, Claudia, Buhl, Eva M., Abt, Birte, Bleich, André, Tolba, René, Blank, Lars Mathias, Navarre, William W., Kießling, Fabian, Horz, Hans-Peter, Torow, Natalia, Cerovic, Vuk, Stecher, Bärbel, Strowig, Till, Overmann, Jörg and Clavel, Thomas), In Cell Host Microbe, volume 30. |
| [7] | Automated analysis of genomic sequences facilitates high-throughput and comprehensive description of bacteria (Hitch, Thomas C. A., Riedel, Thomas, Oren, Aharon, Overmann, Jörg, Lawley, Trevor D. and Clavel, Thomas), In ISME communications, volume 1, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). |
| [6] | The gut microbiota drives the impact of bile acids and fat source in diet on mouse metabolism (Just, Sarah, Mondot, Stanislas, Ecker, Josef, Wegner, Katrin, Rath, Eva, Gau, Laura, Streidl, Theresa, Hery-Arnaud, Genevieve, Schmidt, Sinah, Lesker, Till Robin, Bieth, Valentin, Dunkel, Andreas, Strowig, Till, Hofmann, Thomas, Haller, Dirk, Liebisch, Gerhard, Gérard, Philippe, Rohn, Sascha, Lepage, Patricia and Clavel, Thomas), In Microbiome, volume 6. |
| [5] | MiMiC: a bioinformatic approach for generation of synthetic communities from metagenomes (Kumar, Neeraj, Hitch, Thomas C. A., Haller, Dirk, Lagkouvardos, Ilias and Clavel, Thomas), In Microbial biotechnology, volume 14, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). |
| [4] | Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling (Reitmeier, Sandra, Hitch, Thomas C. A., Treichel, Nicole, Fikas, Nikolaos, Hausmann, Bela, Ramer-Tait, Amanda E., Neuhaus, Klaus, Berry, David, Haller, Dirk, Lagkouvardos, Ilias and Clavel, Thomas), In ISME communications, volume 1, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). |
| [3] | The gut bacterium Extibacter muris produces secondary bile acids and influences liver physiology in gnotobiotic mice (Streidl, Theresa, Karkossa, Isabel, Segura Muñoz, Rafael R., Eberl, Claudia, Zaufel, Alex, Plagge, Johannes, Schmaltz, Robert, Schubert, Kristin, Basic, Marijana, Schneider, Kai Markus, Afify, Mamdouh, Trautwein, Christian, Tolba, René H., Stecher, Bärbel, Doden, Heidi L., Ridlon, Jason M., Ecker, Josef, Moustafa, Tarek, von Bergen, Martin, Ramer-Tait, Amanda E. and Clavel, Thomas), In Gut microbes, volume 13, SFB 1382: Die Darm-Leber-Achse – Funktionelle Zusammenhänge und therapeutische Strategien (403224013). |
| [2] | A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity (Wylensek, David, Hitch, Thomas C A, Riedel, Thomas, Afrizal, Afrizal, Kumar, Neeraj, Wortmann, Esther, Liu, Tianzhe, Devendran, Saravanan, Lesker, Till R, Hernández, Sara B, Heine, Viktoria, Buhl, Eva M, M D'Agostino, Paul, Cumbo, Fabio, Fischöder, Thomas, Wyschkon, Marzena, Looft, Torey, Parreira, Valeria R, Abt, Birte, Doden, Heidi L, Ly, Lindsey, Alves, João M P, Reichlin, Markus, Flisikowski, Krzysztof, Suarez, Laura Navarro, Neumann, Anthony P, Suen, Garret, de Wouters, Tomas, Rohn, Sascha, Lagkouvardos, Ilias, Allen-Vercoe, Emma, Spröer, Cathrin, Bunk, Boyke, Taverne-Thiele, Anja J, Giesbers, Marcel, Wells, Jerry M, Neuhaus, Klaus, Schnieke, Angelika, Cava, Felipe, Segata, Nicola, Elling, Lothar, Strowig, Till, Ridlon, Jason M, Gulder, Tobias A M, Overmann, Jörg and Clavel, Thomas), In Nat. Commun., volume 11. |
| [1] | Early-life immune system maturation in chickens using a synthetic community of cultured gut bacteria (Zenner, Christian, Hitch, Thomas C. A., Riedel, Thomas, Wortmann, Esther, Tiede, Stefan, Buhl, Eva M., Abt, Birte, Neuhaus, Klaus, Velge, Philippe, Overmann, Jörg, Kaspers, Bernd and Clavel, Thomas), In mSystems, volume 6. |